Baaden, M. : rechercher sur Z-Library

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Articles (126)
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Nothing to Sneeze at: A Full-Scale Computational Model of the Human Influenza Virion

Reddy, Tyler, Shorthouse, David, Parton, Daniel, Jefferys, Elizabeth, Fowler, Philip W., Chavent, Matthieu, Baaden, Marc, Sansom, Mark S.P.

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 42 KB

english, 2015

Three hydrolases and a transferase: Comparative analysis of active-site dynamics via the BioSimGrid database

Kaihsu Tai, Marc Baaden, Stuart Murdock, Bing Wu, Muan Hong Ng, Steven Johnston, Richard Boardman, Hans Fangohr, Katherine Cox, Jonathan W. Essex, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics and Modelling

Année:

2007

Langue:

english

Fichier:

PDF, 545 KB

english, 2007

Electrostatically-driven fast association and perdeuteration allow detection of transferred cross-relaxation for G protein-coupled receptor ligands with equilibrium dissociation constants in the high-to-low nanomolar range

Laurent J. Catoire, Marjorie Damian, Marc Baaden, Éric Guittet, Jean-Louis Banères

Journal:

Journal of Biomolecular NMR

Année:

2011

Langue:

english

Fichier:

PDF, 2.93 MB

english, 2011

Coarse-grain modelling of protein–protein interactions

Baaden, Marc, Marrink, Siewert J

Journal:

Current Opinion in Structural Biology

Année:

2013

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2013

New parameters for the gait analysis in the orthopaedic private practice

Wyss, Christian, Baaden,

Journal:

Gait & Posture

Année:

1994

Langue:

english

Fichier:

PDF, 129 KB

english, 1994

Post-War Saints: 1945–1960

Baaden, James

Journal:

History of European Ideas

Année:

2014

Langue:

english

Fichier:

PDF, 231 KB

english, 2014

Theoretical Studies on Lanthanide Cation Extraction by Picolinamides: Ligand–Cation Interactions and Interfacial Behavior

Baaden, M., Berny, F., Madic, C., Schurhammer, R., Wipff, G.

Journal:

Solvent Extraction and Ion Exchange

Année:

2003

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2003

44 Predicting and exploring complex nucleic acids architectures through a coarse-grained model

Cragnolini, T., Doutreligne, S., Baaden, M., Derreumaux, P., Pasquali, S.

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2015

Langue:

english

Fichier:

PDF, 556 KB

english, 2015

Visual Analysis of Biomolecular Cavities: State of the Art

Krone, M., Kozlíková, B., Lindow, N., Baaden, M., Baum, D., Parulek, J., Hege, H.-C., Viola, I.

Journal:

Computer Graphics Forum

Année:

2016

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2016

Visualization of Biomolecular Structures: State of the Art Revisited

Kozlíková, B., Krone, M., Falk, M., Lindow, N., Baaden, M., Baum, D., Viola, I., Parulek, J., Hege, H.-C.

Journal:

Computer Graphics Forum

Année:

2016

Langue:

english

Fichier:

PDF, 11.13 MB

english, 2016

Controlling Redox Enzyme Orientation at Planar Electrodes

Hitaishi, Vivek, Clement, Romain, Bourassin, Nicolas, Baaden, Marc, de Poulpiquet, Anne, Sacquin-Mora, Sophie, Ciaccafava, Alexandre, Lojou, Elisabeth

Journal:

Catalysts

Année:

2018

Langue:

english

Fichier:

PDF, 6.42 MB

english, 2018

Auswirkungen einer mechanischen Vorbehandlung auf das anaerobe Abbauverhalten von organischen Feststoffen

R. Mundhenke, A. Baaden, J. Müller, J. Schwedes

Journal:

Chemie Ingenieur Technik

Année:

2002

Langue:

german

Fichier:

PDF, 56 KB

german, 2002

Photocontrol of Protein Activity in Cultured Cells and Zebrafish with One- and Two-Photon Illumination

Deepak Kumar Sinha, Pierre Neveu, Nathalie Gagey, Isabelle Aujard, Chouaha Benbrahim-Bouzidi, Thomas Le Saux, Christine Rampon, Carole Gauron, Bernard Goetz, Sylvie Dubruille, Marc Baaden, Michel Volo

Journal:

ChemBioChem

Année:

2010

Langue:

english

Fichier:

PDF, 775 KB

english, 2010

Auswirkung einer mechanischen Vorbehandlung auf das anaerobe Abbauverhalten von feuchten organischen Feststoffen

R. Mundhenke, A. Baaden, J. Müller, J. Schwedes

Journal:

Chemie Ingenieur Technik

Année:

2002

Langue:

german

Fichier:

PDF, 195 KB

german, 2002

Mechanische Beanspruchung von pflanzlichen organischen Materialien

A. Baaden, R. Mundhenke, J. A. Müller, J. Schwedes

Journal:

Chemie Ingenieur Technik

Année:

2003

Langue:

german

Fichier:

PDF, 76 KB

german, 2003

Coarse-Grain Simulations of the R-SNARE Fusion Protein in its Membrane Environment Detect Long-Lived Conformational Sub-States

Marie-Pierre Durrieu, Peter J. Bond, Mark S. P. Sansom, Richard Lavery, Marc Baaden

Journal:

ChemPhysChem

Année:

2009

Langue:

english

Fichier:

PDF, 687 KB

english, 2009

Complex molecular assemblies at hand via interactive simulations

Olivier Delalande, Nicolas Férey, Gilles Grasseau, Marc Baaden

Journal:

Journal of Computational Chemistry

Année:

2009

Langue:

english

Fichier:

PDF, 533 KB

english, 2009

GPU-accelerated atom and dynamic bond visualization using hyperballs: A unified algorithm for balls, sticks, and hyperboloids

Matthieu Chavent, Antoine Vanel, Alex Tek, Bruno Levy, Sophie Robert, Bruno Raffin, Marc Baaden

Journal:

Journal of Computational Chemistry

Année:

2011

Langue:

english

Fichier:

PDF, 5.21 MB

english, 2011

Membrane protein structure quality in molecular dynamics simulation

Richard J. Law, Charlotte Capener, Marc Baaden, Peter J. Bond, Jeff Campbell, George Patargias, Yalini Arinaminpathy, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics and Modelling

Année:

2005

Langue:

english

Fichier:

PDF, 195 KB

english, 2005

The chloroform / TBP / aqueous nitric acid interfacial system: a molecular dynamics investigation

M. Baaden, F. Berny, G. Wipff

Journal:

Journal of Molecular Liquids

Année:

2001

Langue:

english

Fichier:

PDF, 927 KB

english, 2001

Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations

José D. Faraldo-Gómez, Lucy R. Forrest, Marc Baaden, Peter J. Bond, Carmen Domene, George Patargias, Jonathan Cuthbertson, Mark S.P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2004

Langue:

english

Fichier:

PDF, 475 KB

english, 2004

Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers

Katherine Cox, Peter J. Bond, Alessandro Grottesi, Marc Baaden, Mark S. P. Sansom

Journal:

European Biophysics Journal

Année:

2008

Langue:

english

Fichier:

PDF, 734 KB

english, 2008

X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation

Bocquet, Nicolas, Nury, Hugues, Baaden, Marc, Le Poupon, Chantal, Changeux, Jean-Pierre, Delarue, Marc, Corringer, Pierre-Jean

Journal:

Nature

Année:

2008

Langue:

english

Fichier:

PDF, 987 KB

english, 2008

X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel

Nury, Hugues, Van Renterghem, Catherine, Weng, Yun, Tran, Alphonso, Baaden, Marc, Dufresne, Virginie, Changeux, Jean-Pierre, Sonner, James M., Delarue, Marc, Corringer, Pierre-Jean

Journal:

Nature

Année:

2011

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2011

Atomic structure and dynamics of pentameric ligand-gated ion channels: new insight from bacterial homologues

Pierre-Jean Corringer, Marc Baaden, Nicolas Bocquet, Marc Delarue, Virginie Dufresne, Hugues Nury, Marie Prevost, Catherine Van Renterghem

Journal:

The Journal of Physiology

Année:

2010

Langue:

english

Fichier:

PDF, 666 KB

english, 2010

TBP at the Water−Oil Interface: The Effect of TBP Concentration and Water Acidity Investigated by Molecular Dynamics Simulations

Baaden, M., Burgard, M., Wipff, G.

Journal:

Journal of Physical Chemistry B

Année:

2001

Langue:

english

Fichier:

PDF, 731 KB

english, 2001

Molecular Dynamics Study of the Uranyl Extraction by Tri-n-butylphosphate (TBP): Demixing of Water/“Oil”/TBP Solutions with a Comparison of Supercritical CO2 and Chloroform

Baaden, Marc, Schurhammer, Rachel, Wipff, Georges

Journal:

Journal of Physical Chemistry B

Année:

2002

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2002

Lanthanide cation binding to a phosphoryl-calix[4]arene: the importance of solvent and counterions investigated by molecular dynamics and quantum mechanical simulations

Baaden, Marc, Burgard, Michel, Boehme, Christian, Wipff, Georges

Journal:

Physical Chemistry Chemical Physics

Année:

2001

Langue:

english

Fichier:

PDF, 667 KB

english, 2001

Understanding small biomolecule-biomaterial interactions: A review of fundamental theoretical and experimental approaches for biomolecule interactions with inorganic surfaces

Dominique Costa, Pierre-Alain Garrain, Marc Baaden

Journal:

Journal of Biomedical Materials Research Part A

Année:

2012

Langue:

english

Fichier:

PDF, 640 KB

english, 2012

A Molecular Dynamics Investigation of Mono and Dimeric States of the Outer Membrane Enzyme OMPLA

Marc Baaden, Christoph Meier, Mark S.P. Sansom

Journal:

Journal of Molecular Biology

Année:

2003

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2003

Interaction of trivalent lanthanide cations with phosphoryl derivatives, amide, anisole, pyridine and triazine ligands: a quantum mechanics study

M Baaden, F Berny, C Boehme, N Muzet, R Schurhammer, G Wipff

Journal:

Journal of Alloys and Compounds

Année:

2000

Langue:

english

Fichier:

PDF, 389 KB

english, 2000

The Closure Mechanism Of M. Tuberculosis Guanylate Kinase Relates Structural Fluctuations To Enzymatic Function

Delalande, Olivier, Sacquin-Mora, Sophie, Baaden, Marc

Journal:

Biophysical Journal

Année:

2009

Langue:

english

Fichier:

PDF, 82 KB

english, 2009

Mypal, a Multi-Resolution Approach For Interactively Locating Functionally Linked Ion Binding Sites

Delalande, Olivier, Férey, Nicolas, Laurent, Benoist, Guéroult, Marc, Hartmann, Brigitte, Baaden, Marc

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 56 KB

english, 2010

Functional Modes and Residue Flexibility Control the Anisotropic Response of Guanylate Kinase to Mechanical Stress

Sacquin-Mora, Sophie, Delalande, Olivier, Baaden, Marc

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 699 KB

english, 2010

Enzyme Closure and Nucleotide Binding Structurally Lock Guanylate Kinase

Delalande, Olivier, Sacquin-Mora, Sophie, Baaden, Marc

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2011

Allosteric Transition and Pharmacological Modulation of Pentameric Channel-Receptors: The Case of General Anesthetics

Corringer, Pierre-Jean, Nury, Hugues, Van Renterghem, Catherine, Yeng, Yun, Tran, Alphonso, Baaden, Marc, Changeux, Jean-Pierre, Sonner, James M., Delarue, Marc

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 39 KB

english, 2012

Study of the Interaction Between General Anesthetics and a Bacterial Homologue to the Human Nicotinic Receptor

Laurent, Benoist, Baaden, Marc, Delarue, Marc, Corringer, Pierre-Jean

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 38 KB

english, 2012

Cysteine Crosslinking to Study Allosteric Transitions of a Bacterial Homolog of Pentameric Channel-Receptors

Prevost, Marie, Sauguet, Ludovic, Nury, Hugues, Van Renterghem, Catherine, Huon, Christèle, Poitevin, Frederic, Baaden, Marc, Delarue, Marc, Corringer, Pierre-Jean

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 40 KB

english, 2012

X-Ray Structures of General Anaesthetics Bound to a Pentameric Ligand-Gated Ion Channel

Nury, Hugues, Van Renterghem, Catherine, Weng, Yun, Tran, Alfonso, Baaden, Marc, Dufresne, Virginie, Changeux, Jean-Pierre, Sonner, Jim, Delarue, Marc, Corringer, Pierre-Jean

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 45 KB

english, 2012

Hyperballs on GPU: Dynamic Visualization of Molecular Structures

Chavent, Matthieu, Tek, Alex, Lu, Zhihan, Piuzzi, Marc, Baaden, Marc

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 63 KB

english, 2012

OmpT: Molecular Dynamics Simulations of an Outer Membrane Enzyme

Baaden, Marc, Sansom, Mark S.P.

Journal:

Biophysical Journal

Année:

2004

Langue:

english

Fichier:

PDF, 873 KB

english, 2004

Microseconds Dynamics Simulations of the Outer-Membrane Protease T

Neri, Marilisa, Baaden, Marc, Carnevale, Vincenzo, Anselmi, Claudio, Maritan, Amos, Carloni, Paolo

Journal:

Biophysical Journal

Année:

2008

Langue:

english

Fichier:

PDF, 453 KB

english, 2008

Interactions between Neuronal Fusion Proteins Explored by Molecular Dynamics

Durrieu, Marie-Pierre, Lavery, Richard, Baaden, Marc

Journal:

Biophysical Journal

Année:

2008

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2008

Cation coordination by calix[4]arenes bearing amide and/or phosphine oxide pendant groups: how many arms are needed to bind Li+ vs. Na+? A combined NMR and molecular dynamics study

Baaden, Marc, Wipff, Georges, Yaftian, Mohamed Reza, Burgard, Michel, Matt, Dominique

Journal:

Journal of the Chemical Society Perkin Transactions 2

Année:

2000

Langue:

english

Fichier:

PDF, 906 KB

english, 2000

Complexation of M 3+ Lanthanide Cations by Calix[4]arene-CMPO Ligands: A Molecular Dynamics Study in Methanol Solution and at a Water/Chloroform Interface

Troxler, L., Baaden, M., Böhmer, V., Wipff, G.

Journal:

Supramolecular Chemistry

Année:

2000

Langue:

english

Fichier:

PDF, 6.93 MB

english, 2000

A locally closed conformation of a bacterial pentameric proton-gated ion channel

Prevost, Marie S, Sauguet, Ludovic, Nury, Hugues, Van Renterghem, Catherine, Huon, Christèle, Poitevin, Frederic, Baaden, Marc, Delarue, Marc, Corringer, Pierre-Jean

Journal:

Nature Structural and Molecular Biology

Année:

2012

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2012

Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels

Sauguet, Ludovic, Poitevin, Frédéric, Murail, Samuel, Van Renterghem, Catherine, Moraga-Cid, Gustavo, Malherbe, Laurie, Thompson, Andrew W, Koehl, Patrice, Corringer, Pierre-Jean, Baaden, Marc, Delaru

Journal:

The EMBO Journal

Année:

2013

Langue:

english

Fichier:

PDF, 2.82 MB

english, 2013

Study of the Interaction between General Anesthetics and a Bacterial Homologue to the Human Nicotinic Receptor

Laurent, Benoist, Murail, Samuel, Broemstrup, Torben, Lindahl, Erik, Baaden, Marc

Journal:

Biophysical Journal

Année:

2013

Langue:

english

Fichier:

PDF, 59 KB

english, 2013

A Zoom on Membrane Fusion through Coarse-Grained, Atomistic and Hybrid Molecular Dynamics of SNARE Proteins

Tek, Alex, Darré, Leonardo, Bond, Peter J., Sansom, Mark S.P., Pantano, Sergio, Baaden, Marc

Journal:

Biophysical Journal

Année:

2013

Langue:

english

Fichier:

PDF, 35 KB

english, 2013

Announcement

Tek, Alex, Darré, Leonardo, Bond, Peter J., Sansom, Mark S.P., Pantano, Sergio, Baaden, Marc

Journal:

Clinical Neurology and Neurosurgery

Année:

1987

Fichier:

PDF, 31 KB

1987